MRIQC: individual T1w report

Summary

Subject ID: 049_ExercisePre.
Date and time: 2018-05-07, 00:41.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.40182325014587206
cnr			3.249426765726484
efc			0.6194389470769553
fber			68.45143127441406
fwhm	avg		4.053383333333334
fwhm	x		3.87754
fwhm	y		4.30218
fwhm	z		3.98043
icvs	csf		0.19220368584215677
icvs	gm		0.4724132663810736
icvs	wm		0.3353830477767696
inu	med		1.2651698589324951
inu	range		0.4804101288318634
qi	1		0.0
qi	2		0.0006743978138671455
rpve	csf		28.002552831419905
rpve	gm		12.265740351529413
rpve	wm		18.085239065946134
size	x		180
size	y		256
size	z		256
snr	csf		2.8075045997452515
snr	gm		10.527386474976167
snr	total		8.51413134504171
snr	wm		12.20750296040371
snrd	csf		10.860926924680081
snrd	gm		21.68421394112699
snrd	total		21.883219120235328
snrd	wm		33.104516494898924
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	6.131589204179031
summary	bg	mad	19.79031753540039
summary	bg	mean	68.92007446289062
summary	bg	median	63.567108154296875
summary	bg	n	2700985.0
summary	bg	p05	38.5001937866211
summary	bg	p95	117.99969329833982
summary	bg	stdv	26.25804328918457
summary	csf	k	0.18655374976409744
summary	csf	mad	118.43054962158203
summary	csf	mean	330.5289306640625
summary	csf	median	328.086181640625
summary	csf	n	21353.0
summary	csf	p05	143.65472106933595
summary	csf	p95	523.4436157226562
summary	csf	stdv	116.8576889038086
summary	gm	k	0.12010678080369752
summary	gm	mad	60.71936798095703
summary	gm	mean	656.2943115234375
summary	gm	median	655.0353393554688
summary	gm	n	41317.0
summary	gm	p05	555.77392578125
summary	gm	p95	761.22490234375
summary	gm	stdv	62.221275329589844
summary	wm	k	0.775917199069283
summary	wm	mad	77.90312957763672
summary	wm	mean	1004.306396484375
summary	wm	median	1000.0191040039062
summary	wm	n	160473.0
summary	wm	p05	877.6509155273437
summary	wm	p95	1146.76708984375
summary	wm	stdv	81.91814422607422
tpm	overlap	csf	0.18696965277194977
tpm	overlap	gm	0.5224738121032715
tpm	overlap	wm	0.5214062333106995
wm2max			0.5705065756008961

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	87e5ed694aedc787caedfb4e47401ee0
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.