MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.40182325014587206
cnr3.249426765726484
efc0.6194389470769553
fber68.45143127441406
fwhmavg4.053383333333334
fwhmx3.87754
fwhmy4.30218
fwhmz3.98043
icvscsf0.19220368584215677
icvsgm0.4724132663810736
icvswm0.3353830477767696
inumed1.2651698589324951
inurange0.4804101288318634
qi10.0
qi20.0006743978138671455
rpvecsf28.002552831419905
rpvegm12.265740351529413
rpvewm18.085239065946134
sizex180
sizey256
sizez256
snrcsf2.8075045997452515
snrgm10.527386474976167
snrtotal8.51413134504171
snrwm12.20750296040371
snrdcsf10.860926924680081
snrdgm21.68421394112699
snrdtotal21.883219120235328
snrdwm33.104516494898924
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk6.131589204179031
summarybgmad19.79031753540039
summarybgmean68.92007446289062
summarybgmedian63.567108154296875
summarybgn2700985.0
summarybgp0538.5001937866211
summarybgp95117.99969329833982
summarybgstdv26.25804328918457
summarycsfk0.18655374976409744
summarycsfmad118.43054962158203
summarycsfmean330.5289306640625
summarycsfmedian328.086181640625
summarycsfn21353.0
summarycsfp05143.65472106933595
summarycsfp95523.4436157226562
summarycsfstdv116.8576889038086
summarygmk0.12010678080369752
summarygmmad60.71936798095703
summarygmmean656.2943115234375
summarygmmedian655.0353393554688
summarygmn41317.0
summarygmp05555.77392578125
summarygmp95761.22490234375
summarygmstdv62.221275329589844
summarywmk0.775917199069283
summarywmmad77.90312957763672
summarywmmean1004.306396484375
summarywmmedian1000.0191040039062
summarywmn160473.0
summarywmp05877.6509155273437
summarywmp951146.76708984375
summarywmstdv81.91814422607422
tpmoverlapcsf0.18696965277194977
tpmoverlapgm0.5224738121032715
tpmoverlapwm0.5214062333106995
wm2max0.5705065756008961

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum87e5ed694aedc787caedfb4e47401ee0
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.